Title Go-and-Back method: effective estimation of the hidden motion of proteins from single-molecule time
نویسندگان
چکیده
We present an effective method for estimating the motion of proteins from the motion of attached probe particles in single-molecule experiments. The framework naturally incorporates Langevin dynamics to compute the most probable trajectory of the protein. By using a perturbation expansion technique, we achieve computational costs more than 3 orders of magnitude smaller than the conventional gradient descent method without loss of simplicity in the computation algorithm. We present illustrative applications of the method using simple models of single-molecule experiments and confirm that the proposed method yields reasonable and stable estimates of the hidden motion in a highly efficient manner.
منابع مشابه
Go-and-Back method: effective estimation of the hidden motion of proteins from single-molecule time series.
We present an effective method for estimating the motion of proteins from the motion of attached probe particles in single-molecule experiments. The framework naturally incorporates Langevin dynamics to compute the most probable trajectory of the protein. By using a perturbation expansion technique, we achieve computational costs more than 3 orders of magnitude smaller than the conventional gra...
متن کاملNew adaptive interpolation schemes for efficient meshbased motion estimation
Motion estimation and compensation is an essential part of existing video coding systems. The mesh-based motion estimation (MME) produces smoother motion field, better subjective quality (free from blocking artifacts), and higher peak signal-to-noise ratio (PSNR) in many cases, especially at low bitrate video communications, compared to the conventional block matching algorithm (BMA). Howev...
متن کاملA Simple Sample Preparation with HPLC-UV Method for Estimation of Clomipramine from Plasma
Clomipramine is a tricyclic antidepressant. Different methods for determination of clomipramine hydrochloride in plasma have been described. Most of these procedures favor the use of acidic back-extraction in extraction procedure and HPLC as the analytical technique. In this study, the clomipramine extraction procedure was modified and a direct injection to the column was performed to shorten t...
متن کاملA Simple Sample Preparation with HPLC-UV Method for Estimation of Clomipramine from Plasma
Clomipramine is a tricyclic antidepressant. Different methods for determination of clomipramine hydrochloride in plasma have been described. Most of these procedures favor the use of acidic back-extraction in extraction procedure and HPLC as the analytical technique. In this study, the clomipramine extraction procedure was modified and a direct injection to the column was performed to shorten t...
متن کاملStructural Equations Modeling of Hidden Genetic Constructs of Production, Reproduction and Longevity in Holstein Cows in Iran
In structural equation modeling, it is possible to create hidden variables that cannot be directly measured by the researcher. The aim of this study was to model the structural equations of hidden genetic constructs of production, reproduction and longevity of Holstein dairy cows in Iran using breeding value of the traits that make up these constructs. Accordingly, the breeding value of th...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2017